Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrtm1Leucine rich repeat transmembrane neuronal 1. (525 aa)    
Predicted Functional Partners:
rab12
RAB12, member RAS oncogene family.
    
  0.743
clstn3
Calsyntenin 3.
   
  
 0.739
trappc10
Trafficking protein particle complex 10.
      
 0.723
LOC111220548
Neurexin 1.
   
 0.666
LOC111219591
Neurexin 1.
   
 0.666
LOC111236123
Neurexin 3b.
   
 0.665
nrxn3
Uncharacterized protein.
   
 0.665
LOC111234540
Uncharacterized protein.
   
 0.651
Nrxn2
Uncharacterized protein.
   
 0.651
ENSSDUP00000024738
Uncharacterized protein.
   
 0.651
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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