Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000001040Uncharacterized protein; Belongs to the histone H2B family. (67 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
   
 0.740
LOC111234323
H2A histone family, member Y; Belongs to the histone H2A family.
   
 0.692
LOC111236427
Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.
   
 0.692
ENSSDUP00000000783
Histone H2A; Belongs to the histone H2A family.
  
 0.676
ENSSDUP00000006989
Histone H2A; Belongs to the histone H2A family.
  
 0.674
ENSSDUP00000001199
Histone H2A; Belongs to the histone H2A family.
  
 0.672
ENSSDUP00000013391
Histone H2A; Belongs to the histone H2A family.
  
 0.672
ENSSDUP00000018517
Histone H2A; Belongs to the histone H2A family.
  
 0.672
ENSSDUP00000018777
Histone H2A; Belongs to the histone H2A family.
  
 0.672
ENSSDUP00000022255
Histone H2A; Belongs to the histone H2A family.
  
 0.672
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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