ENSSDUP00000001040 protein (Seriola dumerili)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSDUP00000001040

Uncharacterized protein; Belongs to the histone H2B family. (67 aa)

Predicted Functional Partners:

leo1

0.866

ctr9

0.755

glyr1

0.747

LOC111222703

0.725

kdm6a

0.725

ENSSDUP00000021538

0.725

kdm6b

0.725

LOC111234323

0.722

LOC111236427

0.722

cdc73

0.714

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSDUP00000001040	ENSSDUP00000021538	ENSSDUP00000001040	ENSSDUP00000021538	Uncharacterized protein; Belongs to the histone H2B family.	Lysine (K)-specific demethylase 6B, b.	0.725
ENSSDUP00000001040	LOC111222703	ENSSDUP00000001040	ENSSDUP00000016908	Uncharacterized protein; Belongs to the histone H2B family.	Lysine (K)-specific demethylase 6A, like.	0.725
ENSSDUP00000001040	LOC111234323	ENSSDUP00000001040	ENSSDUP00000000107	Uncharacterized protein; Belongs to the histone H2B family.	H2A histone family, member Y; Belongs to the histone H2A family.	0.722
ENSSDUP00000001040	LOC111236427	ENSSDUP00000001040	ENSSDUP00000030104	Uncharacterized protein; Belongs to the histone H2B family.	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	0.722
ENSSDUP00000001040	cdc73	ENSSDUP00000001040	ENSSDUP00000012551	Uncharacterized protein; Belongs to the histone H2B family.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.714
ENSSDUP00000001040	ctr9	ENSSDUP00000001040	ENSSDUP00000032486	Uncharacterized protein; Belongs to the histone H2B family.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.755
ENSSDUP00000001040	glyr1	ENSSDUP00000001040	ENSSDUP00000023670	Uncharacterized protein; Belongs to the histone H2B family.	Glyoxylate reductase 1 homolog (Arabidopsis).	0.747
ENSSDUP00000001040	kdm6a	ENSSDUP00000001040	ENSSDUP00000018609	Uncharacterized protein; Belongs to the histone H2B family.	Lysine (K)-specific demethylase 6A.	0.725
ENSSDUP00000001040	kdm6b	ENSSDUP00000001040	ENSSDUP00000030614	Uncharacterized protein; Belongs to the histone H2B family.	Lysine (K)-specific demethylase 6B, a.	0.725
ENSSDUP00000001040	leo1	ENSSDUP00000001040	ENSSDUP00000004681	Uncharacterized protein; Belongs to the histone H2B family.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.866
ENSSDUP00000021538	ENSSDUP00000001040	ENSSDUP00000021538	ENSSDUP00000001040	Lysine (K)-specific demethylase 6B, b.	Uncharacterized protein; Belongs to the histone H2B family.	0.725
ENSSDUP00000021538	LOC111234323	ENSSDUP00000021538	ENSSDUP00000000107	Lysine (K)-specific demethylase 6B, b.	H2A histone family, member Y; Belongs to the histone H2A family.	0.795
ENSSDUP00000021538	LOC111236427	ENSSDUP00000021538	ENSSDUP00000030104	Lysine (K)-specific demethylase 6B, b.	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	0.795
ENSSDUP00000021538	cdc73	ENSSDUP00000021538	ENSSDUP00000012551	Lysine (K)-specific demethylase 6B, b.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.694
ENSSDUP00000021538	glyr1	ENSSDUP00000021538	ENSSDUP00000023670	Lysine (K)-specific demethylase 6B, b.	Glyoxylate reductase 1 homolog (Arabidopsis).	0.402
ENSSDUP00000021538	leo1	ENSSDUP00000021538	ENSSDUP00000004681	Lysine (K)-specific demethylase 6B, b.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.896
LOC111222703	ENSSDUP00000001040	ENSSDUP00000016908	ENSSDUP00000001040	Lysine (K)-specific demethylase 6A, like.	Uncharacterized protein; Belongs to the histone H2B family.	0.725
LOC111222703	LOC111234323	ENSSDUP00000016908	ENSSDUP00000000107	Lysine (K)-specific demethylase 6A, like.	H2A histone family, member Y; Belongs to the histone H2A family.	0.802
LOC111222703	LOC111236427	ENSSDUP00000016908	ENSSDUP00000030104	Lysine (K)-specific demethylase 6A, like.	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	0.802
LOC111222703	cdc73	ENSSDUP00000016908	ENSSDUP00000012551	Lysine (K)-specific demethylase 6A, like.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.694