Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FOXC1Forkhead box C1. (236 aa)    
Predicted Functional Partners:
nfatc2
Nuclear factor of activated T cells 2a.
   
 
 0.528
hoxa5
Homeobox A5a.
    
 0.467
LOC111222337
LIM homeobox 1b.
   
 0.439
ENSSDUP00000030604
LIM zinc-binding domain-containing protein.
   
 0.439
LOC111226293
LIM homeobox 1a.
   
 0.439
LOC111217865
LIM homeobox 5.
   
 0.439
asxl2
ASXL transcriptional regulator 2.
    
 0.428
Zbtb14
Uncharacterized protein.
    
 0.421
LOC111226604
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
    
  0.421
LOC111236864
Zinc finger and BTB domain containing 14.
    
 0.421
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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