STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111240329Syntaxin binding protein 6 (amisyn), like. (296 aa)    
Predicted Functional Partners:
prkcz
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
    
 
 0.600
prkci
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
    
 
 0.600
LOC111223265
Par-6 family cell polarity regulator gamma b.
    
 
 0.554
pard6b
Par-6 partitioning defective 6 homolog beta (C. elegans).
    
 
 0.554
LOC111234839
Par-6 family cell polarity regulator alpha.
    
 
 0.554
exoc4
Exocyst complex component 4.
    
 
 0.468
exoc8
Exocyst complex component 8.
    
 
 0.429
LOC111216771
Myb_DNA-bind_5 domain-containing protein.
    
 
 0.406
LOC111216939
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
    
 
 0.406
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
    
 
 0.406
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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