close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbx20T-box transcription factor 20. (439 aa)    
Predicted Functional Partners:
gsc
Goosecoid.
    
 
 0.871
LOC111226631
NK2 homeobox 5.
   
 
 0.731
gata4
GATA binding protein 4.
   
 
 0.631
hand2
Heart and neural crest derivatives expressed 2.
   
  
 0.630
phf13
PHD finger protein 13.
    
   0.617
slc25a21
Solute carrier family 25 member 21; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
   0.594
mnx1
Motor neuron and pancreas homeobox 1.
    
 
 0.577
LOC111228389
TLE family member 3, transcriptional corepressor.
    
 
 0.500
LOC111232120
TLE family member 2, transcriptional corepressor a.
    
 
 0.500
LOC111232080
TLE family member 2, transcriptional corepressor b.
    
 
 0.500
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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