Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111222846WD repeat domain 82. (595 aa)    
Predicted Functional Partners:
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
   
 0.985
rbbp5
Retinoblastoma binding protein 5.
    
 0.979
cxxc1
CXXC finger protein 1b.
   
 0.973
LOC111235451
CXXC finger protein 1a.
   
 0.973
WDR33
WD repeat domain 33.
   
 0.967
cpsf4
Cleavage and polyadenylation specific factor 4.
   
 0.966
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
   
 0.961
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.944
cpsf1
Cleavage and polyadenylation specific factor 1.
    
 0.943
PPP1CB
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.942
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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