STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111222846WD repeat domain 82. (595 aa)    
Predicted Functional Partners:
WDR33
WD repeat domain 33.
   
 0.981
cpsf4
Cleavage and polyadenylation specific factor 4.
   
 0.970
cpsf1
Cleavage and polyadenylation specific factor 1.
    
 0.967
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.967
fip1l1
FIP1 like 1b (S. cerevisiae).
   
 0.967
ssu72
SSU72 homolog, RNA polymerase II CTD phosphatase.
   
 0.963
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
   
 0.945
LOC111236101
Cleavage and polyadenylation specific factor 3.
   
 0.943
CPSF3
Cleavage and polyadenylation specific factor 3.
   
 0.943
sympk
Symplekin.
   
 
 0.938
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.