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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
papolgPoly(A) polymerase gamma. (821 aa)    
Predicted Functional Partners:
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.974
fip1l1
FIP1 like 1b (S. cerevisiae).
   
 0.974
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.973
sympk
Symplekin.
   
 0.973
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 0.973
WDR33
WD repeat domain 33.
   
 0.972
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
    
 0.964
cstf2
RRM domain-containing protein.
    
 0.961
LOC111236101
Cleavage and polyadenylation specific factor 3.
   
 0.928
CPSF3
Cleavage and polyadenylation specific factor 3.
   
 0.928
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.