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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111226995Calcium voltage-gated channel subunit alpha1 Ia. (2361 aa)    
Predicted Functional Partners:
LOC111235868
Voltage-dependent T-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. This channel gives rise to T-type calcium currents. T-type calcium channels belong to the "low-voltage activated (LVA)" group and are strongly blocked by nickel and mibefradil. A particularity of this type of channels is an opening at quite ne [...]
  
  
 
0.901
LOC111216984
RAS guanyl releasing protein 4.
     
  0.650
LOC111221017
Ras protein specific guanine nucleotide releasing factor 1.
     
  0.650
RASGRP1
RAS guanyl releasing protein 1.
     
  0.650
LOC111228529
Ras protein specific guanine nucleotide releasing factor 1.
     
  0.650
RASGRP2
RAS guanyl releasing protein 2.
     
  0.650
rasgrp3
RAS guanyl releasing protein 3 (calcium and DAG-regulated).
     
  0.650
cacna1e
Calcium channel, voltage-dependent, R type, alpha 1E subunit a.
  
0.601
LOC111227043
Calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, a.
   
0.571
LOC111221156
Voltage-dependent N-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1B gives rise to N-type calcium currents.
   
0.571
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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