Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zfyve28Zinc finger, FYVE domain containing 28. (1021 aa)    
Predicted Functional Partners:
LOC111237530
RNA binding motif protein 46.
      
 0.876
rptor
Regulatory associated protein of MTOR, complex 1.
    
   0.802
exd3
Exonuclease 3'-5' domain containing 3.
      
 0.797
mtor
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
    
   0.665
cunh1orf112
Si:dkey-97o5.1.
      
 0.599
rnf103
Ring finger protein 103.
      
 0.590
ENSSDUP00000008036
MTOR associated protein, LST8 homolog.
    
   0.573
ENSSDUP00000008073
MTOR associated protein, LST8 homolog (S. cerevisiae).
    
   0.573
SLITRK1
SLIT and NTRK like family member 1.
   
  
 0.523
cdadc1
Cytidine and dCMP deaminase domain containing 1.
      
 0.493
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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