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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111229008Kelch-like family member 40a. (613 aa)    
Predicted Functional Partners:
Bbs9
Bardet-Biedl syndrome 9.
   
 0.858
bbs1
Bardet-Biedl syndrome 1.
    
 0.855
bbs7
Bardet-Biedl syndrome 7.
   
 0.853
bbs4
Bardet-Biedl syndrome 4.
    
 0.852
bbs2
Bardet-Biedl syndrome 2.
    
 0.844
ttc8
Tetratricopeptide repeat domain 8.
   
 0.833
lztfl1
Leucine zipper transcription factor-like 1.
   
 0.664
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.559
LOC111224075
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.516
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.516
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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