Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ctscCathepsin C; Belongs to the peptidase C1 family. (459 aa)    
Predicted Functional Partners:
lgmn
Legumain.
   
 
 0.807
bcl2l1
BCL2 like 1.
     
 0.777
LOC111221542
BH4_2 domain-containing protein.
     
 0.777
lman1
Lectin, mannose-binding, 1.
     
 0.764
mcfd2
Multiple coagulation factor deficiency 2.
     
 0.691
CST7
Cystatin F.
   
 
 0.687
xiap
X-linked inhibitor of apoptosis.
     
 0.686
LOC111220232
Baculoviral IAP repeat containing 5a.
     
 0.674
LOC111219265
Baculoviral IAP repeat containing 5b.
     
 0.674
bcl2
BCL2 apoptosis regulator b.
     
 0.669
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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