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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcorl1PUFD domain-containing protein. (147 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.641
pcgf1
Polycomb group ring finger 1.
    
 0.625
pcgf6
Polycomb group ring finger 6.
    
 0.625
LOC111229146
Uncharacterized protein.
    
 0.617
bcl6b
BCL6B transcription repressor.
    
 0.617
bcl6
BCL6A transcription repressor a.
    
 0.617
LOC111223580
MLLT3 super elongation complex subunit.
    
 
 0.596
mllt1
MLLT1 super elongation complex subunit a.
    
 
 0.596
rnf2
Ring finger protein 2.
    
 0.525
RING1
Ring finger protein 1.
    
 0.525
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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