Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bcorl1PUFD domain-containing protein. (147 aa)    
Predicted Functional Partners:
bcor
BCL6 corepressor.
     
 
0.900
PCGF3
Polycomb group ring finger 3.
    
 0.826
usp7
Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family.
    
 0.814
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.774
bcl6
BCL6A transcription repressor a.
    
 0.704
LOC111229146
Uncharacterized protein.
    
 0.688
bcl6b
BCL6B transcription repressor.
    
 0.688
rnf2
Ring finger protein 2.
    
 0.678
RING1
Ring finger protein 1.
    
 0.678
pcgf1
Polycomb group ring finger 1.
    
 0.666
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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