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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000001339Aldo_ket_red domain-containing protein. (401 aa)    
Predicted Functional Partners:
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 0.704
nup133
Nucleoporin 133.
   
 0.703
nup107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.694
nup85
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.665
seh1l
SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.
    
 0.664
nup98
Nucleoporin 98.
   
 0.616
LOC111225162
Si:ch211-216l23.2.
   
 0.616
ncoa5
Nuclear receptor coactivator 5.
   
 0.616
ENSSDUP00000001255
Potassium voltage-gated channel, subfamily F, member 1a; Belongs to the potassium channel family.
   
 0.606
Kcnf1
Potassium voltage-gated channel, subfamily F, member 1b; Belongs to the potassium channel family.
   
 0.606
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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