Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000001339Aldo_ket_red domain-containing protein. (401 aa)    
Predicted Functional Partners:
nup133
Nucleoporin 133.
   
 0.683
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 0.667
nup107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.667
ENSSDUP00000017577
Potassium voltage-gated channel, shaker-related subfamily, member 1b; Belongs to the potassium channel family.
   
 0.648
ENSSDUP00000031467
Potassium voltage-gated channel, shaker-related subfamily, member 1a; Belongs to the potassium channel family.
   
 0.648
ENSSDUP00000001255
Potassium voltage-gated channel, subfamily F, member 1a; Belongs to the potassium channel family.
   
 0.626
Kcnf1
Potassium voltage-gated channel, subfamily F, member 1b; Belongs to the potassium channel family.
   
 0.626
kcnh5
Potassium voltage-gated channel, subfamily H (eag-related), member 5b.
    
 0.623
LOC111236667
Uncharacterized protein.
    
 0.623
LOC111232926
Uncharacterized protein.
    
 0.623
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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