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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Parp10Poly [ADP-ribose] polymerase. (256 aa)    
Predicted Functional Partners:
trpt1
tRNA phosphotransferase 1.
  
  
 0.638
fdps
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
      
 0.635
parp2
Poly [ADP-ribose] polymerase.
    
 
 0.616
lrpprc
Leucine-rich pentatricopeptide repeat containing.
      
 0.585
parp3
Poly [ADP-ribose] polymerase.
    
 
 0.570
RNF146
Ring finger protein 146.
      
 0.556
ENSSDUP00000008987
TROVE domain-containing protein.
      
 0.525
parp16
Poly [ADP-ribose] polymerase.
      
 0.497
pycr3
Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.
      
 0.485
ENSSDUP00000001323
Uncharacterized protein.
 
      0.464
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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