Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mdkMidkine b. (150 aa)    
Predicted Functional Partners:
ENSSDUP00000025494
Tyrosine-protein kinase receptor.
    
 0.678
LOC111225567
Tyrosine-protein kinase receptor.
    
 0.678
LOC111224609
Protein tyrosine phosphatase receptor type Z1b.
    
 0.639
Ptprz1
Protein tyrosine phosphatase receptor type Z1a.
    
 0.639
mtor
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
      
 0.590
pop5
Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
     
  0.565
LOC111222071
ER membrane protein complex subunit 3; Belongs to the EMC3 family.
      
 0.518
mst1r
Macrophage stimulating 1 receptor b.
    
 0.502
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.502
LOC111222844
Macrophage stimulating 1 receptor a.
    
 0.502
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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