STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
efcab2EF-hand calcium binding domain 2. (160 aa)    
Predicted Functional Partners:
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.680
CASK-2
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.680
ENSSDUP00000007690
Zgc:113436.
   
 
 0.655
LOC111238800
Tax1 (human T-cell leukemia virus type I) binding protein 1b.
    
 0.645
galnt2
Polypeptide N-acetylgalactosaminyltransferase.
      
 0.634
ccm2
CCM2 scaffold protein.
    
 0.633
wdr90
WD repeat domain 90.
   
 0.568
ttll7
Tubulin tyrosine ligase-like family, member 7.
      
 0.528
LOC111223177
Tax1 (human T-cell leukemia virus type I) binding protein 1a.
    
 0.510
LOC111224461
Doublecortin-like kinase 1b.
   
 0.503
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.