Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111225411Si:dkey-21a6.5. (314 aa)    
Predicted Functional Partners:
LOC111238808
Tenascin XBa.
    
 0.783
LOC111228257
Tenascin C.
    
 0.783
tnr
Tenascin R (restrictin, janusin).
    
 0.783
ENSSDUP00000016974
Uncharacterized protein.
    
 0.783
tnn
Tenascin N.
    
 0.783
LOC111217856
Zmp:0000000846.
    
 0.783
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 0.667
LOC111218078
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.652
LOC111232635
Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.
    
 0.645
ENSSDUP00000009207
LRRCT domain-containing protein.
    
 0.645
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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