Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111238795Homeobox A11b. (280 aa)    
Predicted Functional Partners:
ANGPTL2
Angiopoietin like 2.
      
 0.600
LOC111219144
Homeobox C10a.
   
  
 0.499
hoxd10
Homeobox D10a.
   
  
 0.449
hand2
Heart and neural crest derivatives expressed 2.
    
 
 0.434
LOC111237647
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.420
LOC111229366
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.411
LOC111226673
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.411
hoxc4
Homeobox C4a.
   
 
 0.402
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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