Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
espnEspin. (830 aa)    
Predicted Functional Partners:
whrn
Whirlin a.
    
 0.742
LOC111231647
Whirlin b.
    
 0.742
GRXCR2
Glutaredoxin and cysteine rich domain containing 2.
     
 0.683
ush1c
Usher syndrome 1C.
   
 0.663
ENSSDUP00000011222
Stereocilin 1.
   
 0.650
ENSSDUP00000015520
BRCA2 DNA repair associated.
    
 0.644
myo3a
Myosin IIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.636
myo3b
Myosin IIIB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.636
fscn2
Fascin.
    
 0.619
LOC111227313
Fascin.
    
 0.619
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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