Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lipeLipase, hormone-sensitive b. (868 aa)    
Predicted Functional Partners:
prkacb
Uncharacterized protein; Belongs to the protein kinase superfamily.
    
 0.954
prkaca
Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b; Belongs to the protein kinase superfamily.
    
 0.954
LOC111227008
Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.
    
 0.954
LOC111230513
Lipase, hormone-sensitive a.
  
  
0.903
prkar1a
Protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) b.
     
 0.902
LOC111222141-2
Protein kinase, cAMP-dependent, regulatory, type II, alpha, B.
     
 0.902
prkar1b
Protein kinase, cAMP-dependent, regulatory, type I, beta.
     
 0.902
prkar2a
Protein kinase, cAMP-dependent, regulatory, type II, alpha A.
     
 0.902
LOC111236256
Protein kinase cAMP-dependent type I regulatory subunit alpha.
     
 0.902
prkar2b
Protein kinase cAMP-dependent type II regulatory subunit beta.
     
 0.902
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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