Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pheta1Si:ch211-193c2.2. (277 aa)    
Predicted Functional Partners:
ocrl
OCRL inositol polyphosphate-5-phosphatase.
    
 
 0.852
inpp5b
Inositol polyphosphate-5-phosphatase B.
    
 
 0.852
cux2
Homeobox protein cut-like.
      
 0.678
LOC111231508
Single-pass membrane protein with aspartate-rich tail 1b.
      
 0.518
smdt1
Single-pass membrane protein with aspartate-rich tail 1a.
      
 0.518
pacsin2
Protein kinase C and casein kinase substrate in neurons 2.
      
 0.481
ndufa6
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
      
 0.481
LOC111227730
Alpha-galactosidase.
    
 
 0.408
LOC111239406
Alpha-galactosidase.
    
 
 0.408
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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