Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmem145Transmembrane protein 145. (550 aa)    
Predicted Functional Partners:
tmem181
Transmembrane protein 181.
   
 
 0.810
trappc11
Trafficking protein particle complex 11.
      
 0.753
pgbd5
PiggyBac transposable element derived 5.
   
  
 0.733
LOC111223419
CDKN2A interacting protein.
      
 0.653
AP3B2
AP-3 complex subunit beta.
   
  
 0.631
mapk8ip2
Mitogen-activated protein kinase 8 interacting protein 2.
   
  
 0.626
pelo
Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.
      
 0.605
LOC111217483
RUN domain containing 3Aa.
   
  
 0.559
LOC111219746
RUN domain containing 3Ab.
   
  
 0.559
tbc1d31
TBC1 domain family, member 31.
    
 0.554
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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