Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111221957Uncharacterized protein. (435 aa)    
Predicted Functional Partners:
LOC111235022
Matrix-remodelling associated 8b.
  
  
 
0.902
phb
Prohibitin.
      
 0.714
LDLRAD3
Low density lipoprotein receptor class A domain containing 3.
      
 0.692
ints11
Integrator complex subunit 11.
      
 0.599
meak7
MTOR associated protein, eak-7 homolog.
      
 0.577
LOC111220090
Matrix-remodelling associated 7.
      
 0.559
TM6SF1
Transmembrane 6 superfamily member 1.
      
 0.541
LOC111228990
Zgc:85843.
      
 0.541
LOC111220430
Fam20C domain-containing protein.
     
  0.522
LOC111227056
FAM20C golgi associated secretory pathway kinase a.
     
  0.522
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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