STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppp5cSerine/threonine-protein phosphatase. (491 aa)    
Predicted Functional Partners:
LOC111218973
Prostaglandin E synthase 3a (cytosolic).
    
 0.942
ptges3
Prostaglandin E synthase 3b (cytosolic).
    
 0.942
hsp90ab1
Heat shock protein 90, alpha (cytosolic), class B member 1.
   
 0.928
LOC111235810
Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.
   
 0.928
LOC111235802
Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.
   
 0.928
map3k5
Mitogen-activated protein kinase kinase kinase 5.
    
 0.926
LOC111235736
Si:ch211-1i11.3.
    
 0.926
trap1
TNF receptor-associated protein 1.
   
 0.905
LOC111220458
Si:ch211-131k2.3.
    
 0.904
LOC111238487
TSC complex subunit 1b.
   
 0.903
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.