Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dnah6Dynein, axonemal, heavy chain 6. (3777 aa)    
Predicted Functional Partners:
LOC111218078
NME/NM23 family member 8; Belongs to the NDK family.
   
 0.701
dnai1
Dynein, axonemal, intermediate chain 1, paralog 2.
  
 0.682
dctn2
Dynactin 2 (p50).
    
 0.676
dnali1
Dynein, axonemal, light intermediate chain 1.
  
 
 0.668
cfap44
WD_REPEATS_REGION domain-containing protein.
   
 0.667
dnai2
Dynein, axonemal, intermediate chain 2b.
   
 0.659
cfap58
Cilia and flagella associated protein 58.
   
 0.657
rsph3
Radial spoke head 3.
  
 
 0.624
WDR63
WD repeat domain 63.
   
 0.609
cfap43
Cilia and flagella associated protein 43.
   
 
 0.602
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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