wfikkn2 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

wfikkn2

Info WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2a. (517 aa)

Predicted Functional Partners:

igsf11

0.514

LOC111218337

0.496

lrit1

0.484

LOC111235305

0.442

LOC111238672

0.439

LOC111232635

0.425

LOC111229131

0.424

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111218337	LOC111232635	ENSSDUP00000008043	ENSSDUP00000002403	Immunoglobulin-like domain containing receptor 1b.	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	0.610
LOC111218337	LOC111235305	ENSSDUP00000008043	ENSSDUP00000014307	Immunoglobulin-like domain containing receptor 1b.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	0.559
LOC111218337	igsf11	ENSSDUP00000008043	ENSSDUP00000015796	Immunoglobulin-like domain containing receptor 1b.	Immunoglobulin superfamily member 11.	0.404
LOC111218337	lrit1	ENSSDUP00000008043	ENSSDUP00000026378	Immunoglobulin-like domain containing receptor 1b.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	0.584
LOC111218337	wfikkn2	ENSSDUP00000008043	ENSSDUP00000001596	Immunoglobulin-like domain containing receptor 1b.	Info WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2a.	0.496
LOC111229131	wfikkn2	ENSSDUP00000017668	ENSSDUP00000001596	TGF_BETA_2 domain-containing protein.	Info WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2a.	0.424
LOC111232635	LOC111218337	ENSSDUP00000002403	ENSSDUP00000008043	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	Immunoglobulin-like domain containing receptor 1b.	0.610
LOC111232635	LOC111235305	ENSSDUP00000002403	ENSSDUP00000014307	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	0.512
LOC111232635	LOC111238672	ENSSDUP00000002403	ENSSDUP00000024400	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	Immunoglobulin-like domain containing receptor 1a.	0.558
LOC111232635	lrit1	ENSSDUP00000002403	ENSSDUP00000026378	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	0.511
LOC111232635	wfikkn2	ENSSDUP00000002403	ENSSDUP00000001596	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	Info WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2a.	0.425
LOC111235305	LOC111218337	ENSSDUP00000014307	ENSSDUP00000008043	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	Immunoglobulin-like domain containing receptor 1b.	0.559
LOC111235305	LOC111232635	ENSSDUP00000014307	ENSSDUP00000002403	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	0.512
LOC111235305	LOC111238672	ENSSDUP00000014307	ENSSDUP00000024400	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	Immunoglobulin-like domain containing receptor 1a.	0.523
LOC111235305	igsf11	ENSSDUP00000014307	ENSSDUP00000015796	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	Immunoglobulin superfamily member 11.	0.412
LOC111235305	wfikkn2	ENSSDUP00000014307	ENSSDUP00000001596	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	Info WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2a.	0.442
LOC111238672	LOC111232635	ENSSDUP00000024400	ENSSDUP00000002403	Immunoglobulin-like domain containing receptor 1a.	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	0.558
LOC111238672	LOC111235305	ENSSDUP00000024400	ENSSDUP00000014307	Immunoglobulin-like domain containing receptor 1a.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	0.523
LOC111238672	lrit1	ENSSDUP00000024400	ENSSDUP00000026378	Immunoglobulin-like domain containing receptor 1a.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	0.533
LOC111238672	wfikkn2	ENSSDUP00000024400	ENSSDUP00000001596	Immunoglobulin-like domain containing receptor 1a.	Info WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2a.	0.439