Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mydgfMyeloid-derived growth factor. (165 aa)    
Predicted Functional Partners:
ssr4
Signal sequence receptor, delta.
   
  
 0.735
cope
Coatomer protein complex, subunit epsilon.
   
  
 0.658
txndc11
Thioredoxin domain containing 11.
   
  
 0.643
pdia6
Protein disulfide isomerase family A, member 6; Belongs to the protein disulfide isomerase family.
   
  
 0.562
xbp1
X-box binding protein 1.
   
 
  0.551
gnptg
N-acetylglucosamine-1-phosphate transferase subunit gamma.
   
   0.525
LOC111239080
EF-hand domain-containing protein.
   
   0.525
prkcsh
Protein kinase C substrate 80K-H.
   
   0.525
slc35b1
Solute carrier family 35 member B1.
   
    0.522
SACM1L
SAC1 like phosphatidylinositide phosphatase.
      
 0.503
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.