Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111229733HMG box domain-containing protein. (769 aa)    
Predicted Functional Partners:
sox5
SRY-box transcription factor 5.
   
 
 0.953
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.853
trip12
Thyroid hormone receptor interactor 12.
    
 
 0.728
sox13
SRY-box transcription factor 13.
    
 
 0.718
LOC111229402
Junction plakoglobin a.
   
 0.653
LOC111222989
Uncharacterized protein.
   
 0.653
LOC111236265
Uncharacterized protein.
   
 0.653
LOC111227979
Doublesex and mab-3 related transcription factor 1.
    
 
 0.612
RELN
Reelin.
      
 0.495
LOC111234726
Troponin C type 2 (fast).
      
 0.493
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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