Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111217889Uncharacterized protein. (520 aa)    
Predicted Functional Partners:
LOC111228111
LY6/PLAUR domain containing 6.
    
 0.681
LYPD6
Uncharacterized protein.
    
 0.681
LOC111217904
Cholinergic receptor, nicotinic, beta polypeptide 3a.
   
  0.518
chrna5
Cholinergic receptor, nicotinic, alpha 5.
   
  0.518
LOC111232437
Cholinergic receptor, nicotinic, beta 3b (neuronal).
   
  0.518
LOC111229796
RIC3 domain-containing protein.
    
 
 0.497
LOC111232287
Uncharacterized protein.
   
  0.486
LOC111237531
Cholinergic receptor, nicotinic, alpha 2b (neuronal).
   
  0.486
ENSSDUP00000020251
Cholinergic receptor, nicotinic, alpha 4b.
   
  0.486
CHRNA9
Cholinergic receptor nicotinic alpha 9 subunit.
   
  0.484
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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