Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rnf10Ring finger protein 10. (786 aa)    
Predicted Functional Partners:
coq5
2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial; Methyltransferase required for the conversion of 2- polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl- 6-methoxy-1,4-benzoquinol (DMQH2).
      
 0.741
bicdl1
BICD family like cargo adaptor 1.
      
 0.708
draxin
Draxin; Chemorepulsive axon guidance protein required for the development of spinal cord and forebrain commissures. Acts as a chemorepulsive guidance protein for commissural axons during development. Able to inhibit or repel neurite outgrowth from dorsal spinal cord; Belongs to the draxin family.
      
 0.653
lrp11
Low density lipoprotein receptor-related protein 11.
      
 0.618
cops5
COP9 signalosome subunit 5.
      
 0.614
haus2
Uncharacterized protein.
    
   0.586
LOC111221500
Canopy FGF signaling regulator 2.
      
 0.574
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 
 0.564
ube2t
Ubiquitin-conjugating enzyme E2T (putative).
    
 
 0.559
cop1
COP1 E3 ubiquitin ligase.
    
 
 0.545
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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