close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc84Coiled-coil domain containing 84. (359 aa)    
Predicted Functional Partners:
entr1
Uncharacterized protein.
      
 0.629
ccp110
Uncharacterized protein.
      
 0.564
mrpl40
Mitochondrial ribosomal protein L40.
      
 0.558
tut1
Terminal uridylyl transferase 1, U6 snRNA-specific.
    
   0.543
prpf3
PRP3 pre-mRNA processing factor 3 homolog (yeast).
    
   0.539
tmem208
Transmembrane protein 208.
      
 0.514
mrgbp
MRG/MORF4L binding protein.
   
  
 0.510
Txnl4b
Uncharacterized protein.
    
 
 0.509
ENSSDUP00000008798
Thioredoxin-like 4B.
    
 
 0.509
KIAA0556
KIAA0556.
      
 0.436
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.