arhgef11 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

arhgef11

Rho guanine nucleotide exchange factor (GEF) 11. (1374 aa)

Predicted Functional Partners:

LOC111219813

0.978

gna12

0.978

LOC111236257

0.978

LOC111233774

0.884

LOC111222939

0.884

LOC111218956

0.884

LOC111230710

0.884

LOC111219488

0.884

RHOB

0.682

LOC111218955

0.682

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111218955	LOC111219813	ENSSDUP00000019735	ENSSDUP00000018656	Uncharacterized protein.	Uncharacterized protein.	0.610
LOC111218955	LOC111236257	ENSSDUP00000019735	ENSSDUP00000023931	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 13b.	0.610
LOC111218955	arhgef11	ENSSDUP00000019735	ENSSDUP00000001674	Uncharacterized protein.	Rho guanine nucleotide exchange factor (GEF) 11.	0.682
LOC111218955	gna12	ENSSDUP00000019735	ENSSDUP00000022987	Uncharacterized protein.	G protein subunit alpha 12.	0.610
LOC111218956	LOC111219813	ENSSDUP00000021075	ENSSDUP00000018656	Uncharacterized protein.	Uncharacterized protein.	0.857
LOC111218956	LOC111236257	ENSSDUP00000021075	ENSSDUP00000023931	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 13b.	0.857
LOC111218956	arhgef11	ENSSDUP00000021075	ENSSDUP00000001674	Uncharacterized protein.	Rho guanine nucleotide exchange factor (GEF) 11.	0.884
LOC111218956	gna12	ENSSDUP00000021075	ENSSDUP00000022987	Uncharacterized protein.	G protein subunit alpha 12.	0.857
LOC111219488	LOC111219813	ENSSDUP00000029821	ENSSDUP00000018656	Ras homolog family member Ca.	Uncharacterized protein.	0.857
LOC111219488	LOC111236257	ENSSDUP00000029821	ENSSDUP00000023931	Ras homolog family member Ca.	Guanine nucleotide binding protein (G protein), alpha 13b.	0.857
LOC111219488	arhgef11	ENSSDUP00000029821	ENSSDUP00000001674	Ras homolog family member Ca.	Rho guanine nucleotide exchange factor (GEF) 11.	0.884
LOC111219488	gna12	ENSSDUP00000029821	ENSSDUP00000022987	Ras homolog family member Ca.	G protein subunit alpha 12.	0.857
LOC111219813	LOC111218955	ENSSDUP00000018656	ENSSDUP00000019735	Uncharacterized protein.	Uncharacterized protein.	0.610
LOC111219813	LOC111218956	ENSSDUP00000018656	ENSSDUP00000021075	Uncharacterized protein.	Uncharacterized protein.	0.857
LOC111219813	LOC111219488	ENSSDUP00000018656	ENSSDUP00000029821	Uncharacterized protein.	Ras homolog family member Ca.	0.857
LOC111219813	LOC111222939	ENSSDUP00000018656	ENSSDUP00000018265	Uncharacterized protein.	Ras homolog gene family, member Ab.	0.857
LOC111219813	LOC111230710	ENSSDUP00000018656	ENSSDUP00000022926	Uncharacterized protein.	Uncharacterized protein.	0.857
LOC111219813	LOC111233774	ENSSDUP00000018656	ENSSDUP00000002943	Uncharacterized protein.	Uncharacterized protein.	0.857
LOC111219813	LOC111236257	ENSSDUP00000018656	ENSSDUP00000023931	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 13b.	0.900
LOC111219813	RHOB	ENSSDUP00000018656	ENSSDUP00000002301	Uncharacterized protein.	Ras homolog family member B.	0.610