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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111217904Cholinergic receptor, nicotinic, beta polypeptide 3a. (453 aa)    
Predicted Functional Partners:
LOC111232287
Uncharacterized protein.
  
0.632
LOC111227413
Cholinergic receptor, nicotinic, alpha 1 (muscle).
  
0.613
CHRNA1
Cholinergic receptor nicotinic alpha 1 subunit.
  
0.613
ENSSDUP00000020251
Cholinergic receptor, nicotinic, alpha 4b.
  
0.602
LOC111237531
Cholinergic receptor, nicotinic, alpha 2b (neuronal).
  
0.599
LOC111219714
Cholinergic receptor, nicotinic, beta 4 (neuronal).
  
0.525
LOC111232448
Cholinergic receptor nicotinic alpha 6 subunit.
  
0.503
LOC111218005
Cholinergic receptor, nicotinic, alpha 6.
  
0.502
chrnb1
Cholinergic receptor, nicotinic, beta 1 (muscle).
  
0.499
LOC111226919
Cholinergic receptor, nicotinic, beta 1 (muscle) like.
  
0.497
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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