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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111230708Uncharacterized protein; Belongs to the beta/gamma-crystallin family. (239 aa)    
Predicted Functional Partners:
tsc2
TSC complex subunit 2.
    
 0.869
mtor
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
    
 0.831
LOC111217580
Intersectin 2b.
    
 0.825
itsn2
Intersectin 2a.
    
 0.825
rptor
Regulatory associated protein of MTOR, complex 1.
    
 0.795
LOC111238487
TSC complex subunit 1b.
   
 0.763
ENSSDUP00000016177
Uncharacterized protein.
   
 0.763
itsn1
Intersectin 1 (SH3 domain protein).
    
 0.723
ENSSDUP00000004365
Uncharacterized protein.
   
 0.692
LOC111234619
Ras-related GTP binding A.
     
 0.646
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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