Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC111228182Human immunodeficiency virus type I enhancer binding protein 3a. (1807 aa)    
Predicted Functional Partners:
fbxw11
F-box and WD repeat domain containing 11b.
    
  0.596
Gpr84
G protein-coupled receptor 84.
    
 0.560
LOC111239735
Uncharacterized protein.
  
   
 0.559
tet1
Tet methylcytosine dioxygenase 1.
  
   
 0.532
ENSSDUP00000000441
AT rich interactive domain 4A (RBP1-like).
    
 0.526
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.526
selenos
Selenoprotein S.
      
 0.509
wwp2
E3 ubiquitin-protein ligase.
    
 0.504
wwp1
WW domain containing E3 ubiquitin protein ligase 1.
    
 0.504
irx3
Iroquois homeobox 3a.
    
 
 0.503
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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