Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111218005Cholinergic receptor, nicotinic, alpha 6. (468 aa)    
Predicted Functional Partners:
ENSSDUP00000020251
Cholinergic receptor, nicotinic, alpha 4b.
   
  0.682
LOC111228111
LY6/PLAUR domain containing 6.
    
  0.657
LYPD6
Uncharacterized protein.
    
  0.657
LOC111217904
Cholinergic receptor, nicotinic, beta polypeptide 3a.
   
 0.626
LOC111232437
Cholinergic receptor, nicotinic, beta 3b (neuronal).
   
 0.626
chrna5
Cholinergic receptor, nicotinic, alpha 5.
   
 0.615
LOC111232287
Uncharacterized protein.
    
  0.607
LOC111237531
Cholinergic receptor, nicotinic, alpha 2b (neuronal).
    
  0.607
LOC111227413
Cholinergic receptor, nicotinic, alpha 1 (muscle).
   
 0.552
CHRNA1
Cholinergic receptor nicotinic alpha 1 subunit.
   
 0.552
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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