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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111220562Uncharacterized protein. (240 aa)    
Predicted Functional Partners:
LOC111233248
Solute carrier family 39 member 7.
    
 
 0.564
SLC39A11
Solute carrier family 39 member 11.
    
 
 0.544
slc30a7
Solute carrier family 30 member 7.
   
 
 0.544
slc39a13
Solute carrier family 39 member 13.
    
 
 0.540
slc30a9
Solute carrier family 30 member 9.
      
 0.534
slc30a5
Solute carrier family 30 member 5.
   
 
 0.495
slc30a4
Solute carrier family 30 member 4.
   
 
 0.477
slc30a6
Solute carrier family 30 member 6.
   
 
 0.458
plekhd1
Pleckstrin homology domain containing, family D (with coiled-coil domains) member 1.
 
    
 0.457
ubfd1
Ubiquitin family domain containing 1.
      
 0.418
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.