LOC111233203 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111233203

5'-nucleotidase, cytosolic IAa. (372 aa)

Predicted Functional Partners:

tyms

0.926

guk1

0.921

atic

0.917

ak3

0.915

LOC111240130

0.915

aprt

0.915

NT5E

0.915

Dctpp1

0.915

adsl

0.914

NT5M

0.913

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Dctpp1	LOC111233203	ENSSDUP00000027404	ENSSDUP00000001744	dCTP pyrophosphatase 1; Hydrolyzes deoxynucleoside triphosphates (dNTPs) to the corresponding nucleoside monophosphates. Has a strong preference for dCTP and its analogs including 5-iodo-dCTP and 5-methyl-dCTP for which it may even have a higher efficiency. May protect DNA or RNA against the incorporation of these genotoxic nucleotide analogs through their catabolism.	5'-nucleotidase, cytosolic IAa.	0.915
Dctpp1	LOC111240130	ENSSDUP00000027404	ENSSDUP00000015122	dCTP pyrophosphatase 1; Hydrolyzes deoxynucleoside triphosphates (dNTPs) to the corresponding nucleoside monophosphates. Has a strong preference for dCTP and its analogs including 5-iodo-dCTP and 5-methyl-dCTP for which it may even have a higher efficiency. May protect DNA or RNA against the incorporation of these genotoxic nucleotide analogs through their catabolism.	5'-nucleotidase ecto.	0.901
Dctpp1	NT5E	ENSSDUP00000027404	ENSSDUP00000024620	dCTP pyrophosphatase 1; Hydrolyzes deoxynucleoside triphosphates (dNTPs) to the corresponding nucleoside monophosphates. Has a strong preference for dCTP and its analogs including 5-iodo-dCTP and 5-methyl-dCTP for which it may even have a higher efficiency. May protect DNA or RNA against the incorporation of these genotoxic nucleotide analogs through their catabolism.	5'-nucleotidase ecto; Belongs to the 5'-nucleotidase family.	0.901
Dctpp1	NT5M	ENSSDUP00000027404	ENSSDUP00000014104	dCTP pyrophosphatase 1; Hydrolyzes deoxynucleoside triphosphates (dNTPs) to the corresponding nucleoside monophosphates. Has a strong preference for dCTP and its analogs including 5-iodo-dCTP and 5-methyl-dCTP for which it may even have a higher efficiency. May protect DNA or RNA against the incorporation of these genotoxic nucleotide analogs through their catabolism.	5',3'-nucleotidase, mitochondrial.	0.902
LOC111233203	Dctpp1	ENSSDUP00000001744	ENSSDUP00000027404	5'-nucleotidase, cytosolic IAa.	dCTP pyrophosphatase 1; Hydrolyzes deoxynucleoside triphosphates (dNTPs) to the corresponding nucleoside monophosphates. Has a strong preference for dCTP and its analogs including 5-iodo-dCTP and 5-methyl-dCTP for which it may even have a higher efficiency. May protect DNA or RNA against the incorporation of these genotoxic nucleotide analogs through their catabolism.	0.915
LOC111233203	LOC111240130	ENSSDUP00000001744	ENSSDUP00000015122	5'-nucleotidase, cytosolic IAa.	5'-nucleotidase ecto.	0.915
LOC111233203	NT5E	ENSSDUP00000001744	ENSSDUP00000024620	5'-nucleotidase, cytosolic IAa.	5'-nucleotidase ecto; Belongs to the 5'-nucleotidase family.	0.915
LOC111233203	NT5M	ENSSDUP00000001744	ENSSDUP00000014104	5'-nucleotidase, cytosolic IAa.	5',3'-nucleotidase, mitochondrial.	0.913
LOC111233203	adsl	ENSSDUP00000001744	ENSSDUP00000024883	5'-nucleotidase, cytosolic IAa.	Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	0.914
LOC111233203	ak3	ENSSDUP00000001744	ENSSDUP00000008623	5'-nucleotidase, cytosolic IAa.	GTP:AMP phosphotransferase AK3, mitochondrial; Involved in maintaining the homeostasis of cellular nucleotides by catalyzing the interconversion of nucleoside phosphates. Has GTP:AMP phosphotransferase and ITP:AMP phosphotransferase activities.	0.915
LOC111233203	aprt	ENSSDUP00000001744	ENSSDUP00000021912	5'-nucleotidase, cytosolic IAa.	Adenine phosphoribosyltransferase.	0.915
LOC111233203	atic	ENSSDUP00000001744	ENSSDUP00000024716	5'-nucleotidase, cytosolic IAa.	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.	0.917
LOC111233203	guk1	ENSSDUP00000001744	ENSSDUP00000023809	5'-nucleotidase, cytosolic IAa.	Guanylate kinase 1a.	0.921
LOC111233203	tyms	ENSSDUP00000001744	ENSSDUP00000010760	5'-nucleotidase, cytosolic IAa.	Thymidylate synthetase.	0.926
LOC111240130	Dctpp1	ENSSDUP00000015122	ENSSDUP00000027404	5'-nucleotidase ecto.	dCTP pyrophosphatase 1; Hydrolyzes deoxynucleoside triphosphates (dNTPs) to the corresponding nucleoside monophosphates. Has a strong preference for dCTP and its analogs including 5-iodo-dCTP and 5-methyl-dCTP for which it may even have a higher efficiency. May protect DNA or RNA against the incorporation of these genotoxic nucleotide analogs through their catabolism.	0.901
LOC111240130	LOC111233203	ENSSDUP00000015122	ENSSDUP00000001744	5'-nucleotidase ecto.	5'-nucleotidase, cytosolic IAa.	0.915
LOC111240130	NT5E	ENSSDUP00000015122	ENSSDUP00000024620	5'-nucleotidase ecto.	5'-nucleotidase ecto; Belongs to the 5'-nucleotidase family.	0.901
LOC111240130	NT5M	ENSSDUP00000015122	ENSSDUP00000014104	5'-nucleotidase ecto.	5',3'-nucleotidase, mitochondrial.	0.926
LOC111240130	adsl	ENSSDUP00000015122	ENSSDUP00000024883	5'-nucleotidase ecto.	Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	0.945
LOC111240130	ak3	ENSSDUP00000015122	ENSSDUP00000008623	5'-nucleotidase ecto.	GTP:AMP phosphotransferase AK3, mitochondrial; Involved in maintaining the homeostasis of cellular nucleotides by catalyzing the interconversion of nucleoside phosphates. Has GTP:AMP phosphotransferase and ITP:AMP phosphotransferase activities.	0.906