Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111228992Cysteine-serine-rich nuclear protein 1a. (584 aa)    
Predicted Functional Partners:
GADD45B-2
Growth arrest and DNA damage inducible beta.
   
  
 0.692
LOC111229072
Zgc:153115.
      
 0.623
ppp1cc
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
   0.528
LOC111217471
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
   0.528
LOC111219951
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
   0.528
LOC111234218
Smoothelin a.
      
 0.508
smtn
Smoothelin b.
      
 0.508
PPP1CB
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
   0.484
LOC111225507
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
   0.484
LOC111226896
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
   0.484
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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