Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000001752Pogo transposable element derived with ZNF domain a. (1258 aa)    
Predicted Functional Partners:
mad2l2
Mitotic arrest deficient 2 like 2.
    
 
 0.881
psip1
PWWP domain-containing protein.
   
 
 0.866
hdgfl2
HDGF like 2.
   
 
 0.794
LOC111223223
Chromobox homolog 3a (HP1 gamma homolog, Drosophila).
    
 0.667
CBX1
Chromobox homolog 1b (HP1 beta homolog Drosophila).
    
 0.667
cbx5
Chromobox homolog 5 (HP1 alpha homolog, Drosophila).
    
 0.667
CBX1-2
Uncharacterized protein.
    
 0.667
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
    
 0.667
ube2i
Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.649
kctd2
Potassium channel tetramerization domain containing 2.
    
  0.649
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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