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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000001752Pogo transposable element derived with ZNF domain a. (1258 aa)    
Predicted Functional Partners:
ube2i
Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.828
kctd2
Potassium channel tetramerization domain containing 2.
    
  0.828
LOC111230319
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.828
psip1
PWWP domain-containing protein.
    
 
 0.823
mphosph8
Chromo domain-containing protein.
   
 0.550
cdyl
Chromodomain protein, Y-like.
   
 
 0.539
CDYL2
Chromodomain Y like 2.
   
 
 0.539
mad2l2
Mitotic arrest deficient 2 like 2.
    
 
 0.511
LOC111229253
CREB binding protein a.
   
 0.501
crebbp
CREB binding protein b.
   
 0.501
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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