elp6 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

elp6

Elongator acetyltransferase complex subunit 6. (273 aa)

Predicted Functional Partners:

elp4

0.998

elp5

0.997

elp2

0.989

elp3

0.988

elp1

0.983

pipox

0.964

zbtb25

0.925

kti12

0.681

ENSSDUP00000008996

0.651

LOC111226511

0.651

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSDUP00000008996	elp4	ENSSDUP00000008996	ENSSDUP00000028769	Immunoresponsive gene 1, like.	Elongator acetyltransferase complex subunit 4.	0.646
ENSSDUP00000008996	elp6	ENSSDUP00000008996	ENSSDUP00000001757	Immunoresponsive gene 1, like.	Elongator acetyltransferase complex subunit 6.	0.651
LOC111226511	elp4	ENSSDUP00000009125	ENSSDUP00000028769	Immunoresponsive gene 1, like.	Elongator acetyltransferase complex subunit 4.	0.646
LOC111226511	elp6	ENSSDUP00000009125	ENSSDUP00000001757	Immunoresponsive gene 1, like.	Elongator acetyltransferase complex subunit 6.	0.651
elp1	elp2	ENSSDUP00000009163	ENSSDUP00000011217	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Elongator acetyltransferase complex subunit 2.	0.997
elp1	elp3	ENSSDUP00000009163	ENSSDUP00000011018	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.998
elp1	elp4	ENSSDUP00000009163	ENSSDUP00000028769	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Elongator acetyltransferase complex subunit 4.	0.998
elp1	elp5	ENSSDUP00000009163	ENSSDUP00000028031	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Elongator acetyltransferase complex subunit 5.	0.979
elp1	elp6	ENSSDUP00000009163	ENSSDUP00000001757	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Elongator acetyltransferase complex subunit 6.	0.983
elp1	kti12	ENSSDUP00000009163	ENSSDUP00000014591	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	KTI12 chromatin associated homolog.	0.875
elp2	elp1	ENSSDUP00000011217	ENSSDUP00000009163	Elongator acetyltransferase complex subunit 2.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.997
elp2	elp3	ENSSDUP00000011217	ENSSDUP00000011018	Elongator acetyltransferase complex subunit 2.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.998
elp2	elp4	ENSSDUP00000011217	ENSSDUP00000028769	Elongator acetyltransferase complex subunit 2.	Elongator acetyltransferase complex subunit 4.	0.996
elp2	elp5	ENSSDUP00000011217	ENSSDUP00000028031	Elongator acetyltransferase complex subunit 2.	Elongator acetyltransferase complex subunit 5.	0.989
elp2	elp6	ENSSDUP00000011217	ENSSDUP00000001757	Elongator acetyltransferase complex subunit 2.	Elongator acetyltransferase complex subunit 6.	0.989
elp3	elp1	ENSSDUP00000011018	ENSSDUP00000009163	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.998
elp3	elp2	ENSSDUP00000011018	ENSSDUP00000011217	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator acetyltransferase complex subunit 2.	0.998
elp3	elp4	ENSSDUP00000011018	ENSSDUP00000028769	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator acetyltransferase complex subunit 4.	0.997
elp3	elp5	ENSSDUP00000011018	ENSSDUP00000028031	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator acetyltransferase complex subunit 5.	0.987
elp3	elp6	ENSSDUP00000011018	ENSSDUP00000001757	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator acetyltransferase complex subunit 6.	0.988