Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111225425UBR-type domain-containing protein. (417 aa)    
Predicted Functional Partners:
rnf181
Ring finger protein 181.
      
 0.616
casp8ap2
Uncharacterized protein.
      
 0.599
NASP
Nuclear autoantigenic sperm protein.
   
 
 0.540
nasp
Nuclear autoantigenic sperm protein (histone-binding).
   
 
 0.540
prim1
DNA primase; Belongs to the eukaryotic-type primase small subunit family.
   
  
 0.528
chaf1b
Chromatin assembly factor 1, subunit B.
      
 0.523
ubr3
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
      
 0.495
ccdc77
Coiled-coil domain containing 77.
      
 0.489
nemp1
Nuclear envelope integral membrane protein 1.
      
 0.478
gins2
DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family.
   
  
 0.469
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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