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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111230690Crystallin, beta B2; Belongs to the beta/gamma-crystallin family. (206 aa)    
Predicted Functional Partners:
LOC111233288
Crystallin, alpha A; Belongs to the small heat shock protein (HSP20) family.
   
 
 0.840
LOC111234403
Crystallin, alpha B, a; Belongs to the small heat shock protein (HSP20) family.
   
 
 0.718
crygs
Crystallin, gamma S2; Belongs to the beta/gamma-crystallin family.
   
 
0.612
BFSP1
Beaded filament structural protein 1; Belongs to the intermediate filament family.
      
 0.573
cryba2
Crystallin, beta A2b; Belongs to the beta/gamma-crystallin family.
   
  
0.524
fbxl7
Si:dkey-192l18.9.
      
 0.483
fbxl6
Uncharacterized protein.
      
 0.483
bfsp2
Beaded filament structural protein 2, phakinin; Belongs to the intermediate filament family.
      
 0.480
ctu1
Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.
      
 0.468
LOC111224095
Crystallin, beta A1a; Belongs to the beta/gamma-crystallin family.
   
  
0.468
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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