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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nclnNicalin. (577 aa)    
Predicted Functional Partners:
ccdc47
Coiled-coil domain containing 47.
    
 
 0.940
tmem147
Transmembrane protein 147.
    
 
 0.930
tmco1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
   
 
 0.913
LOC111229199
Nodal modulator.
    
 
 0.814
LOC111221564
Plug_translocon domain-containing protein.
   
 
 0.780
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.780
sec61a1
Plug_translocon domain-containing protein.
   
 
 0.780
RPL27A
Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.
    
 
 0.774
rpl15
Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.
   
 
 0.771
sec61b
SEC61 translocon beta subunit.
    
   0.771
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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