LOC111228164 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111228164

Opioid receptor, delta 1a; Belongs to the G-protein coupled receptor 1 family. (378 aa)

Predicted Functional Partners:

penk

0.959

pdyn

0.878

LOC111240052

0.791

LOC111230638

0.791

LOC111238516

0.708

LOC111216387

0.650

LOC111221929

0.619

LOC111216952

0.561

GNG4

0.538

gng2

0.538

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNG4	LOC111216952	ENSSDUP00000004181	ENSSDUP00000009021	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Somatostatin.	0.489
GNG4	LOC111228164	ENSSDUP00000004181	ENSSDUP00000001829	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Opioid receptor, delta 1a; Belongs to the G-protein coupled receptor 1 family.	0.538
GNG4	LOC111230638	ENSSDUP00000004181	ENSSDUP00000019245	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Uncharacterized protein.	0.633
GNG4	LOC111240052	ENSSDUP00000004181	ENSSDUP00000007394	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Proopiomelanocortin.	0.633
LOC111216387	LOC111228164	ENSSDUP00000010958	ENSSDUP00000001829	Prepronociceptin b.	Opioid receptor, delta 1a; Belongs to the G-protein coupled receptor 1 family.	0.650
LOC111216387	LOC111238516	ENSSDUP00000010958	ENSSDUP00000022578	Prepronociceptin b.	Uncharacterized protein.	0.900
LOC111216387	pdyn	ENSSDUP00000010958	ENSSDUP00000003002	Prepronociceptin b.	Prodynorphin.	0.929
LOC111216387	penk	ENSSDUP00000010958	ENSSDUP00000005781	Prepronociceptin b.	Proenkephalin a.	0.919
LOC111216952	GNG4	ENSSDUP00000009021	ENSSDUP00000004181	Somatostatin.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.489
LOC111216952	LOC111221929	ENSSDUP00000009021	ENSSDUP00000011674	Somatostatin.	Prepronociceptin a.	0.696
LOC111216952	LOC111228164	ENSSDUP00000009021	ENSSDUP00000001829	Somatostatin.	Opioid receptor, delta 1a; Belongs to the G-protein coupled receptor 1 family.	0.561
LOC111216952	LOC111230638	ENSSDUP00000009021	ENSSDUP00000019245	Somatostatin.	Uncharacterized protein.	0.715
LOC111216952	LOC111238516	ENSSDUP00000009021	ENSSDUP00000022578	Somatostatin.	Uncharacterized protein.	0.672
LOC111216952	LOC111240052	ENSSDUP00000009021	ENSSDUP00000007394	Somatostatin.	Proopiomelanocortin.	0.715
LOC111216952	gng2	ENSSDUP00000009021	ENSSDUP00000009799	Somatostatin.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.489
LOC111216952	pdyn	ENSSDUP00000009021	ENSSDUP00000003002	Somatostatin.	Prodynorphin.	0.811
LOC111216952	penk	ENSSDUP00000009021	ENSSDUP00000005781	Somatostatin.	Proenkephalin a.	0.788
LOC111221929	LOC111216952	ENSSDUP00000011674	ENSSDUP00000009021	Prepronociceptin a.	Somatostatin.	0.696
LOC111221929	LOC111228164	ENSSDUP00000011674	ENSSDUP00000001829	Prepronociceptin a.	Opioid receptor, delta 1a; Belongs to the G-protein coupled receptor 1 family.	0.619
LOC111221929	LOC111230638	ENSSDUP00000011674	ENSSDUP00000019245	Prepronociceptin a.	Uncharacterized protein.	0.672