Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pdgfdPlatelet derived growth factor d; Belongs to the PDGF/VEGF growth factor family. (351 aa)    
Predicted Functional Partners:
pdgfc
Platelet derived growth factor c; Belongs to the PDGF/VEGF growth factor family.
     
0.990
LOC111216519
Platelet-derived growth factor beta polypeptide a; Belongs to the PDGF/VEGF growth factor family.
     
 0.981
pdgfa
Platelet-derived growth factor alpha polypeptide b; Belongs to the PDGF/VEGF growth factor family.
     
 0.971
ENSSDUP00000018537
Platelet-derived growth factor alpha polypeptide a; Belongs to the PDGF/VEGF growth factor family.
     
 0.971
dctn5
Dynactin 5.
    
   0.946
egf
Epidermal growth factor.
    
 0.914
dctn4
Dynactin 4.
    
   0.911
pdgfrb
Platelet-derived growth factor receptor, beta polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.
    
 0.902
DCTN6
Dynactin subunit 6.
    
   0.868
LOC111239082
Uncharacterized protein.
    
   0.868
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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