STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrpl14Mitochondrial ribosomal protein L14. (148 aa)    
Predicted Functional Partners:
ENSSDUP00000002477
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.965
chchd1
Coiled-coil-helix-coiled-coil-helix domain containing 1.
   
   0.956
mrps12
Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.
   
 
 0.950
mrpl20
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
   
 
 0.941
mrps16
Mitochondrial ribosomal protein S16.
   
 
 0.935
mrpl40
Mitochondrial ribosomal protein L40.
   
   0.930
mrpl58
Mitochondrial ribosomal protein L58.
   
 
 0.921
mrpl52
Mitochondrial ribosomal protein L52.
   
   0.916
mrpl54
Mitochondrial ribosomal protein L54.
   
   0.915
tp53i13
Uncharacterized protein.
   
   0.915
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.