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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gria4Glutamate receptor, ionotropic, AMPA 4a. (902 aa)    
Predicted Functional Partners:
LOC111230445
Uncharacterized protein.
  
0.765
GRIA2
Glutamate ionotropic receptor AMPA type subunit 2.
  
0.764
grip1
Glutamate receptor interacting protein 1.
   
 0.721
cnih3
Cornichon family AMPA receptor auxiliary protein 3.
   
 0.698
CNIH2
Cornichon family AMPA receptor auxiliary protein 2.
   
 0.698
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
   
 0.693
CASK-2
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
   
 0.693
cnih1
Cornichon family AMPA receptor auxiliary protein 1.
    
 0.688
LOC111227848
Cornichon family AMPA receptor auxiliary protein 4.
    
 0.681
pick1
Protein interacting with prkca 1.
    
 0.673
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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