Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000001906Uncharacterized protein. (153 aa)    
Predicted Functional Partners:
IFT122
Intraflagellar transport 122.
   
 0.994
wdr19
WD repeat domain 19.
   
 0.987
wdr35
WD repeat-containing protein 35.
   
 0.982
IFT43
Intraflagellar transport 43.
    
 0.978
ttc21b
Tetratricopeptide repeat domain 21B.
   
 0.978
ift172
Intraflagellar transport 172.
   
 0.957
ift20
Intraflagellar transport 20 homolog (Chlamydomonas).
   
 0.934
ift57
Intraflagellar transport 57 homolog (Chlamydomonas).
    
 0.931
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
   
 0.929
ift81
Intraflagellar transport 81 homolog.
   
 0.928
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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