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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
neil3Nei-like DNA glycosylase 3. (591 aa)    
Predicted Functional Partners:
NTHL1
Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines.
   
  
 0.875
dcakd
Dephospho-CoA kinase domain containing.
  
  
 0.839
coasy
CoA synthase.
  
  
 0.839
MUTYH
Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs.
  
  
 0.745
LOC111219987
Si:ch211-141o9.10.
     
 0.731
ybey
YbeY metalloendoribonuclease.
  
  
 0.724
srpra
SRP receptor subunit alpha.
  
  
 0.721
dlgap5
Discs, large (Drosophila) homolog-associated protein 5.
   
    0.718
poln
Polymerase (DNA directed) nu.
  
  
 0.718
helq
Helicase, POLQ like.
  
  
 0.718
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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